UniProtKB/Swiss-Prot Q9UBW7: Variant p.Glu1031Lys

Zinc finger MYM-type protein 2
Gene: ZMYM2
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Variant information Variant position:

1031 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

LB/B The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Glutamate (E) to Lysine (K) at position 1031 (E1031K, p.Glu1031Lys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from medium size and acidic (E) to large size and basic (K) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

Found in a patient with congenital anomalies of the kidney and urinary tract; likely benign; no effect on localization to the nucleus; no effect on transcriptional repression activity. Any additional useful information about the variant.

Sequence information Variant position:

1031 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

1377 The length of the canonical sequence.
Location on the sequence:

PRAAEELDMENEFLLPPVFG E EYEEQPRPRSKKKGAKRKAV The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         PRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGAKRKAV

Mouse                         PRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGTKRKAV

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 1377	Zinc finger MYM-type protein 2
Region	1028 – 1064	Disordered
Alternative sequence	550 – 1377	Missing. In isoform 2.

Literature citations
Mutations of the transcriptional corepressor ZMYM2 cause syndromic urinary tract malformations.
Connaughton D.M.; Dai R.; Owen D.J.; Marquez J.; Mann N.; Graham-Paquin A.L.; Nakayama M.; Coyaud E.; Laurent E.M.N.; St-Germain J.R.; Blok L.S.; Vino A.; Klaembt V.; Deutsch K.; Wu C.W.; Kolvenbach C.M.; Kause F.; Ottlewski I.; Schneider R.; Kitzler T.M.; Majmundar A.J.; Buerger F.; Onuchic-Whitford A.C.; Youying M.; Kolb A.; Salmanullah D.; Chen E.; van der Ven A.T.; Rao J.; Ityel H.; Seltzsam S.; Rieke J.M.; Chen J.; Vivante A.; Hwang D.Y.; Kohl S.; Dworschak G.C.; Hermle T.; Alders M.; Bartolomaeus T.; Bauer S.B.; Baum M.A.; Brilstra E.H.; Challman T.D.; Zyskind J.; Costin C.E.; Dipple K.M.; Duijkers F.A.; Ferguson M.; Fitzpatrick D.R.; Fick R.; Glass I.A.; Hulick P.J.; Kline A.D.; Krey I.; Kumar S.; Lu W.; Marco E.J.; Wentzensen I.M.; Mefford H.C.; Platzer K.; Povolotskaya I.S.; Savatt J.M.; Shcherbakova N.V.; Senguttuvan P.; Squire A.E.; Stein D.R.; Thiffault I.; Voinova V.Y.; Somers M.J.G.; Ferguson M.A.; Traum A.Z.; Daouk G.H.; Daga A.; Rodig N.M.; Terhal P.A.; van Binsbergen E.; Eid L.A.; Tasic V.; Rasouly H.M.; Lim T.Y.; Ahram D.F.; Gharavi A.G.; Reutter H.M.; Rehm H.L.; MacArthur D.G.; Lek M.; Laricchia K.M.; Lifton R.P.; Xu H.; Mane S.M.; Sanna-Cherchi S.; Sharrocks A.D.; Raught B.; Fisher S.E.; Bouchard M.; Khokha M.K.; Shril S.; Hildebrandt F.;
Am. J. Hum. Genet. 107:727-742(2020)
Cited for: VARIANTS VAL-61 DEL; ALA-126; VAL-387; ARG-649; HIS-763; LEU-763; GLU-775; ASP-997 DEL AND LYS-1031; CHARACTERIZATION OF VARIANTS VAL-61 DEL; ALA-126; VAL-387; ARG-649; HIS-763; LEU-763; GLU-775; ASP-997 DEL AND LYS-1031; VARIANTS NECRC 208-ARG--ASP-1377 DEL; 398-GLN--ASP-1377 DEL; 540-ARG--ASP-1377 DEL; 722-LEU--ASP-1377 DEL; 780-ARG--ASP-1377 DEL AND 1082-TRP--ASP-1377 DEL; CHARACTERIZATION OF VARIANTS NECRC 398-GLN--ASP-1377 DEL AND 540-ARG--ASP-1377 DEL; FUNCTION; SUBCELLULAR LOCATION; INTERACTION WITH FOXP1 AND FOXP2;

Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.