Expasy logo

UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot O96028: Variant p.Lys1019Arg

Histone-lysine N-methyltransferase NSD2
Gene: NSD2
Feedback?
Variant information Variant position: help 1019 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Lysine (K) to Arginine (R) at position 1019 (K1019R, p.Lys1019Arg). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Similar physico-chemical property. Both residues are large size and basic. The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In RAUST; decreased histone methyltransferase activity H3-K36 specific. Any additional useful information about the variant.


Sequence information Variant position: help 1019 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1365 The length of the canonical sequence.
Location on the sequence: help PYGKVQIYTADISEIPKCNC K PTDENPCGFDSECLNRMLMF The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         PYGKVQIYTADISEIPKCNCKPTDENPCGFDSECLNRMLMF

Mouse                         PYGKVQIYTADISEIPKCNCKPTDENPCGSDSECLNRMLMF
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1365 Histone-lysine N-methyltransferase NSD2
Domain 1011 – 1061 AWS
Binding site 1016 – 1016
Binding site 1018 – 1018
Binding site 1026 – 1026
Binding site 1026 – 1026
Binding site 1032 – 1032
Alternative sequence 274 – 1365 Missing. In isoform 7.
Alternative sequence 485 – 1365 Missing. In isoform 6.
Alternative sequence 630 – 1365 Missing. In isoform 5.
Alternative sequence 648 – 1365 Missing. In isoform 3.



Literature citations
Loss-of-function and missense variants in NSD2 cause decreased methylation activity and are associated with a distinct developmental phenotype.
Zanoni P.; Steindl K.; Sengupta D.; Joset P.; Bahr A.; Sticht H.; Lang-Muritano M.; van Ravenswaaij-Arts C.M.A.; Shinawi M.; Andrews M.; Attie-Bitach T.; Maystadt I.; Belnap N.; Benoit V.; Delplancq G.; de Vries B.B.A.; Grotto S.; Lacombe D.; Larson A.; Mourmans J.; Ounap K.; Petrilli G.; Pfundt R.; Ramsey K.; Blok L.S.; Tsatsaris V.; Vitobello A.; Faivre L.; Wheeler P.G.; Wevers M.R.; Wojcik M.; Zweier M.; Gozani O.; Rauch A.;
Genet. Med. 23:1474-1483(2021)
Cited for: VARIANTS RAUST 600-ARG--LYS-1365 DEL; 720-CYS--LYS-1365 DEL; 755-ARG--LYS-1365 DEL; TYR-869; LEU-895; ARG-1019; LYS-1091 AND PHE-1137; CHARACTERIZATION OF VARIANTS RAUST TYR-869; LEU-895; ARG-1019 AND PHE-1137; FUNCTION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.