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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q93009: Variant p.Asp1080Asn

Ubiquitin carboxyl-terminal hydrolase 7
Gene: USP7
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Variant information Variant position: help 1080 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Aspartate (D) to Asparagine (N) at position 1080 (D1080N, p.Asp1080Asn). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (D) to medium size and polar (N) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In HAFOUS. Any additional useful information about the variant.


Sequence information Variant position: help 1080 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 1102 The length of the canonical sequence.
Location on the sequence: help LKDFEPQPGNMSHPRPWLGL D HFNKAPKRSRYTYLEKAIKI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         LKDFEP-QPGNMSHPRPWLGLDHFNKAPKRSRYTYLEKAIKI

Mouse                         LKDFEP-QPGNMSHPRPWLGLDHFNKAPKRSRYTYLEKAIK

Rat                           LKDFEP-QPGNMSHPRPWLGLDHFNKAPKRSRYTYLEKAIK

Chicken                       LKDFEP-QPGNMSHPRPWLGLDHFNKAPK-DRYTYLEKAYK

Caenorhabditis elegans        LADMANQTTG---VPQVYIGLDH--KSPIQHS---SEAAIR

Drosophila                    LEVYRSWTSGQL----PFFGLDHINKSRKRSSLNFSEKAIK

Baker's yeast                 R----------------KHGSDKNLKISSSDVYVLFYE--R

Fission yeast                 S----------------WD------EVSKVEAYMLFYE--R
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 1102 Ubiquitin carboxyl-terminal hydrolase 7
Modified residue 1084 – 1084 N6-acetyllysine
Modified residue 1096 – 1096 N6-acetyllysine
Beta strand 1076 – 1080



Literature citations
Pathogenic variants in USP7 cause a neurodevelopmental disorder with speech delays, altered behavior, and neurologic anomalies.
Fountain M.D.; Oleson D.S.; Rech M.E.; Segebrecht L.; Hunter J.V.; McCarthy J.M.; Lupo P.J.; Holtgrewe M.; Moran R.; Rosenfeld J.A.; Isidor B.; Le Caignec C.; Saenz M.S.; Pedersen R.C.; Morgan T.M.; Pfotenhauer J.P.; Xia F.; Bi W.; Kang S.L.; Patel A.; Krantz I.D.; Raible S.E.; Smith W.; Cristian I.; Torti E.; Juusola J.; Millan F.; Wentzensen I.M.; Person R.E.; Kuery S.; Bezieau S.; Uguen K.; Ferec C.; Munnich A.; van Haelst M.; Lichtenbelt K.D.; van Gassen K.; Hagelstrom T.; Chawla A.; Perry D.L.; Taft R.J.; Jones M.; Masser-Frye D.; Dyment D.; Venkateswaran S.; Li C.; Escobar L.F.; Horn D.; Spillmann R.C.; Pena L.; Wierzba J.; Strom T.M.; Parenti I.; Kaiser F.J.; Ehmke N.; Schaaf C.P.;
Genet. Med. 21:1797-1807(2019)
Cited for: VARIANTS HAFOUS ILE-225; LYS-345; PHE-373; ASP-392; GLY-485; 576-CYS--ASN-1102 DEL; PRO-757; THR-766 AND ASN-1080; INVOLVEMENT IN HAFOUS;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.