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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q96M63: Variant p.Ala248Thr

Outer dynein arm-docking complex subunit 1
Gene: ODAD1
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Variant information Variant position: help 248 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Alanine (A) to Threonine (T) at position 248 (A248T, p.Ala248Thr). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from small size and hydrophobic (A) to medium size and polar (T) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 0 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In CILD20; expressed at very low levels in patients' nasal epithelial cells; the genetic variation producing this missense variant predominantly affects splicing. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 248 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 670 The length of the canonical sequence.
Location on the sequence: help KLKNNDRQPDPDVLEKREKQ A GEVAEGVWKTSQERLVLCYE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         KLKNNDRQPDPDVLEKREKQAGEVAEGVWKTSQERLVLCYE

Mouse                         KLKNDERQPDPRVVQKAEQRDWEVSEGLRKTSQEKLVLRYE

Rat                           KLKNHDRQPDPGVVQKEEQRAWETSEGLRKTSQEKLVLRYE

Bovine                        KLKNGDRQPDSAIVEKREQRAREVAEGLRKTSQEKLVLRYE
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 670 Outer dynein arm-docking complex subunit 1



Literature citations
Splice-Site mutations in the axonemal outer dynein arm docking complex gene CCDC114 cause primary ciliary dyskinesia.
Onoufriadis A.; Paff T.; Antony D.; Shoemark A.; Micha D.; Kuyt B.; Schmidts M.; Petridi S.; Dankert-Roelse J.E.; Haarman E.G.; Daniels J.M.; Emes R.D.; Wilson R.; Hogg C.; Scambler P.J.; Chung E.M.; Pals G.; Mitchison H.M.;
Am. J. Hum. Genet. 92:88-98(2013)
Cited for: FUNCTION; SUBCELLULAR LOCATION; TISSUE SPECIFICITY; INVOLVEMENT IN CILD20; VARIANT CILD20 THR-248; CHARACTERIZATION OF VARIANT CILD20 THR-24;
Exome sequencing identifies mutations in CCDC114 as a cause of primary ciliary dyskinesia.
Knowles M.R.; Leigh M.W.; Ostrowski L.E.; Huang L.; Carson J.L.; Hazucha M.J.; Yin W.; Berg J.S.; Davis S.D.; Dell S.D.; Ferkol T.W.; Rosenfeld M.; Sagel S.D.; Milla C.E.; Olivier K.N.; Turner E.H.; Lewis A.P.; Bamshad M.J.; Nickerson D.A.; Shendure J.; Zariwala M.A.;
Am. J. Hum. Genet. 92:99-106(2013)
Cited for: FUNCTION; INVOLVEMENT IN CILD20; VARIANT CILD20 THR-248; CHARACTERIZATION OF VARIANT CILD20 THR-24; TISSUE SPECIFICITY;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.