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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q6PI26: Variant p.Glu292Lys

Protein SHQ1 homolog
Gene: SHQ1
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Variant information Variant position: help 292 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Glutamate (E) to Lysine (K) at position 292 (E292K, p.Glu292Lys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from medium size and acidic (E) to large size and basic (K) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help 1 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In NEDDS; results in decreased H/ACA small nucleolar ribonucleoproteins production when expressed in a heterologous system. Any additional useful information about the variant.
Other resources: help Links to websites of interest for the variant.


Sequence information Variant position: help 292 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 577 The length of the canonical sequence.
Location on the sequence: help CYSLIDILLAYCYETRVTEG E KNVESAWNIRKLSPTLCWFE The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         CYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFE

Mouse                         YYGLVDILLAYCYEVRVTEGEHSVESAWTIRKLSPTLCWFE

Bovine                        YYSLIDILLAYCYETRVTEGERNVESAWNIRKLSPTLCWFE

Xenopus tropicalis            YLGLIDLLLAYCYEVRVTEGDQNVESAWNIRKLSSTLSWFE

Zebrafish                     WLGLVDIILAYVYDVRTTEGEHNVESAWTIRKLSGTLSWLE

Caenorhabditis elegans        MTSLIDIVFGYCYDQRVNDWESACESGWNCAKLSPSLSFFA

Drosophila                    DCGLISILLAICYDVRTTNNEPTCESGWTRSILCPLYCYFE

Baker's yeast                 YVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLD

Fission yeast                 YLCLVPLIFAYAYDNRTTLGDPTIESCWNIGTLSSTISCLD
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 577 Protein SHQ1 homolog



Literature citations
Compound heterozygous variants in SHQ1 are associated with a spectrum of neurological features, including early-onset dystonia.
Sleiman S.; Marshall A.E.; Dong X.; Mhanni A.; Alidou-D'Anjou I.; Frosk P.; Marin S.E.; Stark Z.; Del Bigio M.R.; McBride A.; Sadedin S.; Gallacher L.; Christodoulou J.; Boycott K.M.; Dragon F.; Kernohan K.D.;
Hum. Mol. Genet. 31:614-624(2022)
Cited for: VARIANT DYT35 TYR-175; INVOLVEMENT IN DYT35; CHARACTERIZATION OF VARIANT DYT35 TYR-175; VARIANT NEDDS LYS-292; INVOLVEMENT IN NEDDS; CHARACTERIZATION OF VARIANT NEDDS LYS-292; FUNCTION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.