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UniProtKB/Swiss-Prot variant pages

UniProtKB/Swiss-Prot Q9Y289: Variant p.Tyr162Cys

Sodium-dependent multivitamin transporter
Gene: SLC5A6
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Variant information Variant position: help 162 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant: help LP/P [Disclaimer] The variants are classified into three categories: LP/P, LB/B and US.
  • LP/P: likely pathogenic or pathogenic.
  • LB/B: likely benign or benign.
  • US: uncertain significance
Residue change: help From Tyrosine (Y) to Cysteine (C) at position 162 (Y162C, p.Tyr162Cys). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties: help Change from large size and aromatic (Y) to medium size and polar (C) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score: help -2 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:
  • Lowest score: -4 (low probability of substitution).
  • Highest score: 11 (high probability of substitution).
More information can be found on the following page
Variant description: help In COMNB; no effect on membrane localization. Any additional useful information about the variant.


Sequence information Variant position: help 162 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length: help 635 The length of the canonical sequence.
Location on the sequence: help RVCGTVTFIFQMVIYMGVVL Y APSLALNAVTGFDLWLSVLA The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation: help The multiple alignment of the region surrounding the variant against various orthologous sequences. 
Human                         RVCGTVTFIFQMVIYMGVVLYAPSLALNAVTGFDLWLSVLA

Mouse                         RICGTVTFIFQMVIYMGVALYAPSLALNAVTGFDLWLSVLA

Rat                           RICGTVTFIFQMVVYMGVALYAPSLALNAVTGFDLWLSVLA

Rabbit                        RICGTVTFIFQMVIYMGVVLYAPSLALNAVTGFDLWLSVLT

Drosophila                    RLAASLSFSLQMVLYMGIVVYAPALALEAVTGLSQVFSIVI
Sequence annotation in neighborhood: help The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:
  • Type: the type of sequence feature.
  • Positions: endpoints of the sequence feature.
  • Description: contains additional information about the feature.
TypePositionsDescription
Chain 1 – 635 Sodium-dependent multivitamin transporter
Transmembrane 143 – 163 Helical
Mutagenesis 144 – 144 C -> A. No effect on biotin transport.



Literature citations
Novel biallelic variants expand the SLC5A6-related phenotypic spectrum.
Holling T.; Nampoothiri S.; Tarhan B.; Schneeberger P.E.; Vinayan K.P.; Yesodharan D.; Roy A.G.; Radhakrishnan P.; Alawi M.; Rhodes L.; Girisha K.M.; Kang P.B.; Kutsche K.;
Eur. J. Hum. Genet. 30:439-449(2022)
Cited for: VARIANTS COMNB 94-ARG--LEU-635 DEL; CYS-162 AND GLY-429; CHARACTERIZATION OF VARIANTS COMNB CYS-162 AND GLY-429; INVOLVEMENT IN COMNB; SUBCELLULAR LOCATION;
Disclaimer: Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.