UniProtKB/Swiss-Prot Q9H267 : Variant p.Cys576Arg
Vacuolar protein sorting-associated protein 33B
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Variant information
Variant position:
576
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:
Disclaimer : Variants classification is intended for research purposes only, not for clinical and diagnostic use . The label disease variant is assigned according to literature reports on probable disease-association that can be based on theoretical reasons. This label must not be considered as a definitive proof for the pathogenic role of a variant. ]
The variants are classified into three categories: LP/P, LB/B and US.LP/P: likely pathogenic or pathogenic. LB/B: likely benign or benign. US: uncertain significance
Residue change:
576 (C576R, p.Cys576Arg).
Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:
The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:
The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another: Lowest score: -4 (low probability of substitution).Highest score: 11 (high probability of substitution).following page
Variant description:
Any additional useful information about the variant.
Other resources:
Links to websites of interest for the variant.
Sequence information
Variant position:
576
The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:
617
The length of the canonical sequence.
Location on the sequence:
C TFSEISALRFLGREKGYRFI
The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:
The multiple alignment of the region surrounding the variant against various orthologous sequences.
Human KEDKASSESLRLILVVFL-GGC TFSEISALRFLGREKGYRFI
Mouse KEDKASSESLRLILVVFL-GGC TFSEISALRFLGREKGYRF
Rat KEDKASSESLRLILVVFL-GGC TFSEISALRFLGREKGYRF
Bovine KDDKASSESLRLILVVFL-GGC TFSEISALRFLGREKGYRF
Zebrafish SEARNKSNGQRIILVMFL-GGC TYSEISALRFLGKERGCRF
Caenorhabditis elegans AADRRPDNRTRKAIMVFVNGGI TYWEVAALRLLAIQKNFRI
Sequence annotation in neighborhood:
The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:Type: the type of sequence feature. Positions: endpoints of the sequence feature. Description: contains additional information about the feature.
Type Positions Description
Chain
2 – 617 Vacuolar protein sorting-associated protein 33B
Literature citations
Novel missense mutation in VPS33B is associated with isolated low gamma-glutamyltransferase cholestasis: Attenuated, incomplete phenotype of arthrogryposis, renal dysfunction, and cholestasis syndrome.
Qiu Y.L.; Liu T.; Abuduxikuer K.; Hao C.Z.; Gong J.Y.; Zhang M.H.; Li L.T.; Yan Y.Y.; Li J.Q.; Wang J.S.;
Hum. Mutat. 40:2247-2257(2019)
Cited for: VARIANT ARCS1 523-ARG--ALA-617 DEL; VARIANT PFIC12 ARG-576; CHARACTERIZATION OF VARIANT PFIC12 ARG-576; INVOLVEMENT IN PFIC12; SUBCELLULAR LOCATION;
Disclaimer:
Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. They are not in any way intended to be used as a substitute for professional medical advice, diagnostic, treatment or care.
