UniProtKB/Swiss-Prot Q13813: Variant p.Arg1464Trp

Spectrin alpha chain, non-erythrocytic 1
Gene: SPTAN1
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Variant information Variant position:

1464 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Type of variant:

US The variants are classified into three categories: LP/P, LB/B and US.

LP/P: likely pathogenic or pathogenic.
LB/B: likely benign or benign.
US: uncertain significance

Residue change:

From Arginine (R) to Tryptophan (W) at position 1464 (R1464W, p.Arg1464Trp). Indicates the amino acid change of the variant. The one-letter and three-letter codes for amino acids used in UniProtKB/Swiss-Prot are those adopted by the commission on Biochemical Nomenclature of the IUPAC-IUB.
Physico-chemical properties:

Change from large size and basic (R) to large size and aromatic (W) The physico-chemical property of the reference and variant residues and the change implicated.
BLOSUM score:

-3 The score within a Blosum matrix for the corresponding wild-type to variant amino acid change. The log-odds score measures the logarithm for the ratio of the likelihood of two amino acids appearing by chance. The Blosum62 substitution matrix is used. This substitution matrix contains scores for all possible exchanges of one amino acid with another:

Lowest score: -4 (low probability of substitution).
Highest score: 11 (high probability of substitution).

More information can be found on the following page
Variant description:

In DEVEP; uncertain significance. Any additional useful information about the variant.
Other resources:

Links to websites of interest for the variant.

Variant rs1489830382 [ dbSNP | Ensembl ]

Sequence information Variant position:

1464 The position of the amino-acid change on the UniProtKB canonical protein sequence.
Protein sequence length:

2472 The length of the canonical sequence.
Location on the sequence:

CLELQLFHRDCEQAENWMAA R EAFLNTEDKGDSLDSVEALI The residue change on the sequence. Unless the variant is located at the beginning or at the end of the protein sequence, both residues upstream (20) and downstream (20) of the variant will be shown.
Residue conservation:

The multiple alignment of the region surrounding the variant against various orthologous sequences.

Human                         CLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALI

Mouse                         CLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALI

Rat                           CLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALI

Chicken                       CLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALI

Sequence annotation in neighborhood:

The regions or sites of interest surrounding the variant. In general the features listed are posttranslational modifications, binding sites, enzyme active sites, local secondary structure or other characteristics reported in the cited references. The "Sequence annotation in neighborhood" lines have a fixed format:

Type: the type of sequence feature.
Positions: endpoints of the sequence feature.
Description: contains additional information about the feature.

Type	Positions	Description
Chain	1 – 2472	Spectrin alpha chain, non-erythrocytic 1
Repeat	1446 – 1549	Spectrin 13
Helix	1413 – 1466

Literature citations
Expanding SPTAN1 monoallelic variant associated disorders: From epileptic encephalopathy to pure spastic paraplegia and ataxia.
Morsy H.; Benkirane M.; Cali E.; Rocca C.; Zhelcheska K.; Cipriani V.; Galanaki E.; Maroofian R.; Efthymiou S.; Murphy D.; O'Driscoll M.; Suri M.; Banka S.; Clayton-Smith J.; Wright T.; Redman M.; Bassetti J.A.; Nizon M.; Cogne B.; Jamra R.A.; Bartolomaeus T.; Heruth M.; Krey I.; Gburek-Augustat J.; Wieczorek D.; Gattermann F.; Mcentagart M.; Goldenberg A.; Guyant-Marechal L.; Garcia-Moreno H.; Giunti P.; Chabrol B.; Bacrot S.; Buissonniere R.; Magry V.; Gowda V.K.; Srinivasan V.M.; Melegh B.; Szabo A.; Suemegi K.; Cossee M.; Ziff M.; Butterfield R.; Hunt D.; Bird-Lieberman G.; Hanna M.; Koenig M.; Stankewich M.; Vandrovcova J.; Houlden H.;
Genet. Med. 25:76-89(2023)
Cited for: VARIANTS SPG91 TRP-19; CYS-2119 AND PHE-2443; VARIANTS DEVEP 376-TRP--ASN-2472 DEL; 627-ARG--ASN-2472 DEL; 733-ARG--ASN-2472 DEL; TRP-1464; 1641-GLN--ASN-2472 DEL AND GLN-2199; VARIANTS DEE5 LYS-2078 DEL; GLU-2202 DEL; LYS-2266 AND ASP-GLN-LEU-2300 INS; INVOLVEMENT IN SPG91; INVOLVEMENT IN DEVEP; INVOLVEMENT IN DEE5;

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