PRATT is a tool to discover patterns conserved in a set of protein sequences.
This tool can also be run from the EBI server with very similar modalities.
Ax(2,3)B
ALVGB AGLB ALDB
GG[PS]Lx(1,3)R
G, [PS], L and R
x
x(7)
x(1,3)
Ax(2)PxGx(0,2)Dx(3,5)S
x(0,2)
x(3,5)
x(3)
x(1,2)
(flexibility of wildcard_1 + 1) * ... * (flexibility of wildcard_n + 1)
Cx(2,4)[DE]x(10)F
(2+1) * (0+1)
Cx(2,4)[DE]x(10,14)F
(2+1) * (4+1)
G
[DE]
Cx(4)D
Cx[ILV]xDx(3)[DEF]
I
[ILV]
L
[IL]
Cx(2,4)DE

CxxDE